CC BY 4.0 · SynOpen 2024; 08(02): 100-108
DOI: 10.1055/s-0043-1763747
paper

Discovery of Novel N-Acylhydrazone Derivatives as Potent Inhibitors of Sirtuin-1

Victoria V. Lipson
a   State Institution ‘V. Ya. Danilevsky Institute for Endocrine Pathology Problems’, National Academy of Medical Sciences of Ukraine, Alchevsky St., 10, Kharkiv, 61002, Ukraine
c   V.N. Karazin Kharkiv National University, 4 Svobody Sq., Kharkiv, 61022, Ukraine
,
Fedyr G. Yaremenko
a   State Institution ‘V. Ya. Danilevsky Institute for Endocrine Pathology Problems’, National Academy of Medical Sciences of Ukraine, Alchevsky St., 10, Kharkiv, 61002, Ukraine
,
Volodymyr M. Vakula
a   State Institution ‘V. Ya. Danilevsky Institute for Endocrine Pathology Problems’, National Academy of Medical Sciences of Ukraine, Alchevsky St., 10, Kharkiv, 61002, Ukraine
b   Division of Chemistry of Functional Materials, State Scientific Institution ‘Institute for Single Crystals’ NAS of Ukraine, 60 Nauky Ave., Kharkiv, 61072, Ukraine
,
Svitlana V. Kovalenko
b   Division of Chemistry of Functional Materials, State Scientific Institution ‘Institute for Single Crystals’ NAS of Ukraine, 60 Nauky Ave., Kharkiv, 61072, Ukraine
,
Alexander V. Kyrychenko
b   Division of Chemistry of Functional Materials, State Scientific Institution ‘Institute for Single Crystals’ NAS of Ukraine, 60 Nauky Ave., Kharkiv, 61072, Ukraine
c   V.N. Karazin Kharkiv National University, 4 Svobody Sq., Kharkiv, 61022, Ukraine
,
Sergiy M. Desenko
b   Division of Chemistry of Functional Materials, State Scientific Institution ‘Institute for Single Crystals’ NAS of Ukraine, 60 Nauky Ave., Kharkiv, 61072, Ukraine
,
Petro О. Borysko
d   ENAMINE Ltd., Chervonotkatska str., 67, Kyiv, 02094, Ukraine
,
Sergiy O. Zozulya
d   ENAMINE Ltd., Chervonotkatska str., 67, Kyiv, 02094, Ukraine
› Author Affiliations
The authors acknowledge the National Academy of Science of Ukraine for financial support under the project 0122U001857 and the National Academy of Medical Science of Ukraine for financial support under the project 0121U111536.


Abstract

SIRT1 enzyme is a key family member of Silent Information Regulators (Sirtuins), which catalyze the deacetylation of proteins. Therefore, developing new SIRT1 inhibitors has potential application in treating cancer disease and age-related metabolic disorders. In this study, we synthesized a series of N-acylhydrazone (NAH) derivatives and performed high-throughput screening of their inhibitory activity against the recombinant SIRT1 protein by a luminescent assay. Using in silico screening, we identified a new NAH derivative that features both selectivity and a high binding affinity towards the active pocket of SIRT1 that are comparable to known inhibitors such as Ex527 and Sirtinol. Such high binding affinity makes the new derivatives promising alternatives to the available inhibitors and holds promise for developing better-targeted drugs against SIRT1 activity.

Supporting Information



Publication History

Received: 12 November 2023

Accepted: 11 March 2024

Article published online:
04 April 2024

© 2024. The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes or adapted, remixed, transformed or built upon. (https://creativecommons.org/licenses/by/4.0/)

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  • References

  • 1 Baylin SB, Jones PA. Nat. Rev. Cancer 2011; 11: 726
  • 2 Yoo CB, Jones PA. Nat. Rev. Drug Discovery 2006; 5: 37
  • 3 Jones PA, Baylin SB. Cell 2007; 128: 683
  • 4 Teixeira CS. S, Cerqueira NM. F. S. A, Gomes P, Sousa SF. Int. J. Mol. Sci. 2020; 21: 8609
  • 5 Nightingale KP, O’Neill LP, Turner BM. Curr. Opin. Genet. Dev. 2006; 16: 125
  • 6 Lavu S, Boss O, Elliott PJ, Lambert PD. Nat. Rev. Drug Discovery 2008; 7: 841
  • 7 Kumar A, Chauhan S. Eur. J. Med. Chem. 2016; 119: 45
  • 8 Wu Q.-J, Zhang T.-N, Chen H.-H, Yu X.-F, Lv J.-L, Liu Y.-Y, Liu Y.-S, Zheng G, Zhao J.-Q, Wei Y.-F, Guo J.-Y, Liu F.-H, Chang Q, Zhang Y.-X, Liu C.-G, Zhao Y.-H. Signal Transduction Targeted Ther. 2022; 7: 402
  • 9 Wang T, Wang Y, Liu L, Jiang Z, Li X, Tong R, He J, Shi J. Eur. J. Med. Chem. 2020; 193: 112207
  • 10 Gregoretti I, Lee Y.-M, Goodson HV. J. Mol. Biol. 2004; 338: 17
  • 11 Falkenberg KJ, Johnstone RW. Nat. Rev. Drug Discovery 2014; 13: 673
  • 12 Ruijter AJ. M. d, Gennip AH. v, Caron HN, Kemp S, Kuilenburg AB. P. v. Biochem. J. 2003; 370: 737
  • 13 Blander G, Guarente L. Annu. Rev. Biochem. 2004; 73: 417
  • 14 Feldman JL, Dittenhafer-Reed KE, Denu JM. J. Biol. Chem. 2012; 287: 42419
  • 15 Nandave M, Acharjee R, Bhaduri K, Upadhyay J, Rupanagunta GP, Ansari MN. Int. J. Biol. Macromol. 2023; 242: 124581
  • 16 Sauve AA, Wolberger C, Schramm VL, Boeke JD. Annu. Rev. Biochem. 2006; 75: 435
  • 17 Yamamoto H, Schoonjans K, Auwerx J. Mol. Endocrinol. 2007; 21: 1745
  • 18 Cantó C, Auwerx J. Curr. Opin. Lipidol. 2009; 20: 98
  • 19 Lan F, Cacicedo JM, Ruderman N, Ido Y. J. Biol. Chem. 2008; 283: 27628
  • 20 Zhang T, Kraus WL. Biochim. Biophys. Acta 2010; 1804: 1666
  • 21 Villalba JM, Alcaín FJ. BioFactors 2012; 38: 349
  • 22 Mellini P, Valente S, Mai A. Expert Opin. Ther. Pat. 2015; 25: 5
  • 23 Fischer A, Sananbenesi F, Mungenast A, Tsai L.-H. Trends Pharmacol. Sci. 2010; 31: 605
  • 24 Kratz EM, Sołkiewicz K, Kubis-Kubiak A, Piwowar A. Int. J. Mol. Sci. 2021; 22: 630
  • 25 Pagans S, Pedal A, North BJ, Kaehlcke K, Marshall BL, Dorr A, Hetzer-Egger C, Henklein P, Frye R, McBurney MW, Hruby H, Jung M, Verdin E, Ott M. PLoS Biol. 2005; 3: e41
  • 26 Chen L. Curr. Med. Chem. 2011; 18: 1936
  • 27 Abbotto E, Scarano N, Piacente F, Millo E, Cichero E, Bruzzone S. Molecules 2022; 27: 5641
  • 28 Purushotham N, Singh M, Paramesha B, Kumar V, Wakode S, Banerjee SK, Poojary B, Asthana S. RSC Adv. 2022; 12: 3809
  • 29 Kumar R, Nigam L, Singh AP, Singh K, Subbarao N, Dey S. Eur. J. Med. Chem. 2017; 127: 909
  • 30 Wu J, Zhang D, Chen L, Li J, Wang J, Ning C, Yu N, Zhao F, Chen D, Chen X, Chen K, Jiang H, Liu H, Liu D. J. Med. Chem. 2013; 56: 761
  • 31 Han H, Li C, Li M, Yang L, Zhao S, Wang Z, Liu H, Liu D. Molecules 2020; 25: 2755
  • 32 Yang L.-L, Wang H.-L, Yan Y.-H, Liu S, Yu Z.-J, Huang M.-Y, Luo Y, Zheng X, Yu Y, Li G.-B. Eur. J. Med. Chem. 2020; 192: 112201
  • 33 Suzuki T, Imai K, Nakagawa H, Miyata N. ChemMedChem 2006; 1: 1059
  • 34 Botta GP, De Santis L, Saladino R. Curr. Med. Chem. 2012; 19: 5871
  • 35 Grozinger CM, Chao ED, Blackwell HE, Moazed D, Schreiber SL. J. Biol. Chem. 2001; 276: 38837
  • 36 Heltweg B, Gatbonton T, Schuler AD, Posakony J, Li H, Goehle S, Kollipara R, DePinho RA, Gu Y, Simon JA, Bedalov A. Cancer Res. 2006; 66: 4368
  • 37 Lain S, Hollick JJ, Campbell J, Staples OD, Higgins M, Aoubala M, McCarthy A, Appleyard V, Murray KE, Baker L, Thompson A, Mathers J, Holland SJ, Stark MJ. R, Pass G, Woods J, Lane DP, Westwood NJ. Cancer Cell 2008; 13: 454
  • 38 Uciechowska U, Schemies J, Neugebauer RC, Huda E.-M, Schmitt ML, Meier R, Verdin E, Jung M, Sippl W. ChemMedChem 2008; 3: 1965
  • 39 Li C, Hu S.-S, Yang L, Wang M, Long J.-D, Wang B, Han H, Zhu H, Zhao S, Liu J.-G, Liu D, Liu H. ACS Med. Chem. Lett. 2021; 12: 397
  • 40 Napper AD, Hixon J, McDonagh T, Keavey K, Pons J.-F, Barker J, Yau WT, Amouzegh P, Flegg A, Hamelin E, Thomas RJ, Kates M, Jones S, Navia MA, Saunders JO, DiStefano PS, Curtis R. J. Med. Chem. 2005; 48: 8045
  • 41 Laaroussi H, Ding Y, Teng Y, Deschamps P, Vidal M, Yu P, Broussy S. Eur. J. Med. Chem. 2020; 202: 112561
  • 42 Sanders BD, Jackson B, Brent M, Taylor AM, Dang W, Berger SL, Schreiber SL, Howitz K, Marmorstein R. Bioorg. Med. Chem. 2009; 17: 7031
  • 43 Disch JS, Evindar G, Chiu CH, Blum CA, Dai H, Jin L, Schuman E, Lind KE, Belyanskaya SL, Deng J, Coppo F, Aquilani L, Graybill TL, Cuozzo JW, Lavu S, Mao C, Vlasuk GP, Perni RB. J. Med. Chem. 2013; 56: 3666
  • 44 Challa CS, Katari NK, Nallanchakravarthula V, Nayakanti D, Kapavarapu R, Pal M. J. Mol. Struct. 2021; 1245: 131069
  • 45 Spinck M, Bischoff M, Lampe P, Meyer-Almes F.-J, Sievers S, Neumann H. J. Med. Chem. 2021; 64: 5838
  • 46 Kondabanthini S, Akshinthala P, Katari NK, Srimannarayana M, Gundla R, Kapavarapu R, Pal M. J. Mol. Struct. 2023; 1276: 134753
  • 47 Kondabanthini S, Katari NK, Srimannarayana M, Gundla R, Kapavarapu R, Pal M. J. Mol. Struct. 2022; 1266: 133527
  • 48 Challa CS, Katari NK, Nallanchakravarthula V, Nayakanti D, Kapavarapu R, Pal M. J. Mol. Struct. 2022; 1253: 132309
  • 49 Ganapathisivaraja P, Rao GV. N, Ramarao A, Tej MB, Praneeth MS, Kapavarapu R, Rao MV. B, Pal M. J. Mol. Struct. 2022; 1250: 131788
  • 50 Manikanttha M, Deepti K, Tej MB, Reddy AG, Kapavarapu R, Rao MV. B, Pal M. J. Mol. Struct. 2022; 1264: 133313
  • 51 Trapp J, Meier R, Hongwiset D, Kassack MU, Sippl W, Jung M. ChemMedChem 2007; 2: 1419
  • 52 Oh WK, Cho KB, Hien TT, Kim TH, Kim HS, Dao TT, Han H.-K, Kwon S.-M, Ahn S.-G, Yoon J.-H, Kim TH, Kim YG, Kang KW. Mol. Pharmacol. 2010; 78: 855
  • 53 Schuetz A, Min J, Antoshenko T, Wang C.-L, Allali-Hassani A, Dong A, Loppnau P, Vedadi M, Bochkarev A, Sternglanz R, Plotnikov AN. Structure 2007; 15: 377
  • 54 Yaremenko FG, Vakula VM, Svydlo IM, Borodina VV, Borisko P. О, Zozulya SO, Grynukova AB. UA Patent 121892, 2020
  • 55 Thota S, Rodrigues DA, Pinheiro P. dS. M, Lima LM, Fraga CA. M, Barreiro EJ. Bioorg. Med. Chem. Lett. 2018; 28: 2797
  • 56 Trott O, Olson AJ. J. Comput. Chem. 2010; 31: 455
  • 57 Goodsell DS, Sanner MF, Olson AJ, Forli S. Protein Sci. 2021; 30: 31
  • 58 Zhao X, Allison D, Condon B, Zhang F, Gheyi T, Zhang A, Ashok S, Russell M, MacEwan I, Qian Y, Jamison JA, Luz JG. J. Med. Chem. 2013; 56: 963
  • 59 Dai H, Case AW, Riera TV, Considine T, Lee JE, Hamuro Y, Zhao H, Jiang Y, Sweitzer SM, Pietrak B, Schwartz B, Blum CA, Disch JS, Caldwell R, Szczepankiewicz B, Oalmann C, Yee NgP, White BH, Casaubon R, Narayan R, Koppetsch K, Bourbonais F, Wu B, Wang J, Qian D, Jiang F, Mao C, Wang M, Hu E, Wu JC, Perni RB, Vlasuk GP, Ellis JL. Nat. Commun. 2015; 6: 7645
  • 60 Karaman B, Jung M, Sippl W. Structure-Based Design and Computational Studies of Sirtuin Inhibitors . In Epi-informatics . Medina-Franco JL. Academic Press; Boston: 2016: 297-325
  • 61 Mai A, Valente S, Meade S, Carafa V, Tardugno M, Nebbioso A, Galmozzi A, Mitro N, De Fabiani E, Altucci L, Kazantsev A. J. Med. Chem. 2009; 52: 5496
  • 62 Azminah A, Erlina L, Radji M, Mun’im A, Syahdi RR, Yanuar A. Comput. Biol. Chem. 2019; 83: 107096
  • 63 Manna D, Bhuyan R, Ghosh R. J. Mol. Model. 2018; 24: 340
  • 64 Schiedel M, Robaa D, Rumpf T, Sippl W, Jung M. Med. Res. Rev. 2018; 38: 147
  • 65 Peck B, Chen C.-Y, Ho K.-K, Di Fruscia P, Myatt SS, Coombes RC, Fuchter MJ, Hsiao C.-D, Lam EW. F. Mol. Cancer Ther. 2010; 9: 844
  • 66 Promega corporation. SIRT-Glo™ Assay and Screening System. Technical Manual . Promega Corporation; Madison: 2015: 1-22