ABSTRACT
Genetic testing in hemophilia A continues to diversify. This article describes recent
advances in several aspects of genetic analysis and its interpretation and reporting.
The intron 1 and 22 inversions responsible for 50% of severe hemophilia A cases can
be sought using long and inverse polymerase chain reaction (PCR) techniques. Point
mutations are analyzed in remaining patients by PCR amplification of the F8 protein-coding region followed by either mutation screening to identify the mutated
amplicon and subsequent DNA sequencing or by directly sequencing amplified DNA. Many
technique modifications and sequence analysis software packages are available to reduce
time and effort required to identify a mutation. Dosage analysis and gap PCR have
been described to identify carriers of large F8 deletions. Noninvasive prenatal fetal sex determination and preimplantation genetic
diagnosis extend the reproductive options available to hemophilia carriers. Guidelines
on undertaking and reporting the testing plus external quality assessment are now
available to help ensure that genetic analysis yields accurate and well-interpreted
results.
KEYWORDS
Hemophilia A - mutation - molecular pathology - genetic analysis
REFERENCES
- 1 HAMSTeRS .The Haemophilia A Mutation, Structure, Test and Resource Site. Available at http://europium.csc.mrc.ac.uk/WebPages/Main/main.htm Accessed January 10, 2008
- 2 HGMD .The Human Gene Mutation Database at the Institute of Medical Genetics in Cardiff. Available at http://www.hgmd.cf.ac.uk/ac/index.php Accessed January 10, 2008
- 3
Lakich D, Kazazian Jr H H, Antonarakis S E, Gitschier J.
Inversions disrupting the factor VIII gene are a common cause of severe haemophilia
A.
Nat Genet.
1993;
5
236-241
- 4
Bagnall R D, Waseem N, Green P M, Giannelli F.
Recurrent inversion breaking intron 1 of the factor VIII gene is a frequent cause
of severe hemophilia A.
Blood.
2002;
99
168-174
- 5
Ghosh K, Shetty S, Mohanty D.
Inversion of intron 1 is a rare cause of severe hemophilia A in Indian population.
J Thromb Haemost.
2004;
2
1481-1482
- 6
Cumming A M.
The factor VIII gene intron 1 inversion mutation: prevalence in severe hemophilia
A patients in the UK.
J Thromb Haemost.
2004;
2
205-206
- 7
Muhle C, Zenker M, Chuzhanova N, Schneider H.
Recurrent inversion with concomitant deletion and insertion events in the coagulation
factor VIII gene suggests a new mechanism for X-chromosomal rearrangements causing
hemophilia A.
Hum Mutat.
2007;
28
1045
- 8
Bogdanova N, Markoff A, Pollmann H et al..
Spectrum of molecular defects and mutation detection rate in patients with severe
hemophilia A.
Hum Mutat.
2005;
26
249-254
- 9
Santacroce R, Acquila M, Belvini D et al..
Identification of 217 unreported mutations in the F8 gene in a group of 1,410 unselected
Italian patients with hemophilia A.
J Hum Genet.
2008;
53
275-284
- 10
Vidal F, Farssac E, Tusell J, Puig L, Gallardo D.
First molecular characterization of an unequal homologous alu-mediated recombination
event responsible for hemophilia.
Thromb Haemost.
2002;
88
12-16
- 11
Rossetti L C, Goodeve A, Larripa I B, De Brasi C D.
Homeologous recombination between AluSx-sequences as a cause of hemophilia.
Hum Mutat.
2004;
24
440
- 12
Nakaya S M, Hsu T C, Geraghty S J, Manco-Johnson M J, Thompson A R.
Severe hemophilia A due to a 1.3 kb factor VIII gene deletion including exon 24: homologous
recombination between 41 bp within an Alu repeat sequence in introns 23 and 24.
J Thromb Haemost.
2004;
2
1941-1945
- 13
Van de Water N, Williams R, Ockelford P, Browett P.
A 20.7 kb deletion within the factor VIII gene associated with LINE-1 element insertion.
Thromb Haemost.
1998;
79
938-942
- 14
Kazazian Jr H H, Wong C, Youssoufian H, Scott A F, Phillips D G, Antonarakis S E.
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel
mechanism for mutation in man.
Nature.
1988;
332
164-166
- 15
Ganguly A, Dunbar T, Chen P, Godmilow L, Ganguly T.
Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to
severe hemophilia A.
Hum Genet.
2003;
113
348-352
- 16
Sukarova E, Dimovski A J, Tchacarova P, Petkov G H, Efremov G D.
An Alu insert as the cause of a severe form of hemophilia A.
Acta Haematol.
2001;
106
126-129
- 17
Sheen C R, Jewell U R, Morris C M et al..
Double complex mutations involving F8 and FUNDC2 caused by distinct break-induced
replication.
Hum Mutat.
2007;
28
1198-1206
- 18
Bogdanova N, Markoff A, Pollmann H et al..
Prevalence of small rearrangements in the factor VIII gene F8C among patients with
severe hemophilia A.
Hum Mutat.
2002;
20
236-237
- 19
Dai L, Cutler J A, Savidge G F, Mitchell M J.
Characterization of a causative mutation of hemophilia A identified in the promoter
region of the factor VIII gene (F8).
J Thromb Haemost.
2008;
6
193-195
- 20
Bogdanova N, Markoff A, Eisert R et al..
Spectrum of molecular defects and mutation detection rate in patients with mild and
moderate hemophilia A.
Hum Mutat.
2007;
28
54-60
- 21
Acquila M, Pasino M, Lanza T, Bottini F, Molinari A C, Bicocchi M P.
Duplication of exon 13 causes one third of the cases of mild hemophilia A in northern
Italy.
Haematologica.
2004;
89
758-759
- 22
Oldenburg J, Ivaskevicius V, Rost S et al..
Evaluation of DHPLC in the analysis of hemophilia A.
J Biochem Biophys Methods.
2001;
47
39-51
- 23
Vinciguerra C, Zawadzki C, Dargaud Y et al..
Characterization of 96 mutations in 128 unrelated severe haemophilia A patients from
France. Description of 62 novel mutations.
Thromb Haemost.
2006;
95
593-599
- 24
Jayandharan G, Shaji R V, Baidya S, Nair S C, Chandy M, Srivastava A.
Identification of factor VIII gene mutations in 101 patients with haemophilia A: mutation
analysis by inversion screening and multiplex PCR and CSGE and molecular modelling
of 10 novel missense substitutions.
Haemophilia.
2005;
11
481-491
- 25
Bagnall R D, Waseem N H, Green P M, Colvin B, Lee C, Giannelli F.
Creation of a novel donor splice site in intron 1 of the factor VIII gene leads to
activation of a 191 bp cryptic exon in two haemophilia A patients.
Br J Haematol.
1999;
107
766-771
- 26
El-Maarri O, Herbiniaux U, Graw J et al..
Analysis of mRNA in hemophilia A patients with undetectable mutations reveals normal
splicing in the factor VIII gene.
J Thromb Haemost.
2005;
3
332-339
- 27
El-Maarri O, Singer H, Klein C et al..
Lack of F8 mRNA: a novel mechanism leading to hemophilia A.
Blood.
2006;
107
2759-2765
- 28
Mazurier C, Hilbert L.
Type 2N von Willebrand disease.
Curr Hematol Rep.
2005;
4
350-358
- 29
Schneppenheim R, Budde U, Krey S et al..
Results of a screening for von Willebrand disease type 2N in patients with suspected
haemophilia A or von Willebrand disease type 1.
Thromb Haemost.
1996;
76
598-602
- 30
Nesbitt I M, Goodeve A C, Guilliatt A M, Makris M, Preston F E, Peake I R.
Characterisation of type 2N von Willebrand disease using phenotypic and molecular
techniques.
Thromb Haemost.
1996;
75
959-964
- 31
ISTH-VWF-SSC .
International Society on Thrombosis and Haemostasis Scientific and Standardization
Committee VWF Information Homepage.
Available at http://www.vwf.group.shef.ac.uk/
Accessed March 23, 2008;
- 32
Zhang B, Ginsburg D.
Familial multiple coagulation factor deficiencies: new biologic insight from rare
genetic bleeding disorders.
J Thromb Haemost.
2004;
2
1564-1572
- 33
Zhang B, McGee B, Yamaoka J S et al..
Combined deficiency of factor V and factor VIII is due to mutations in either LMAN1
or MCFD2.
Blood.
2006;
107
1903-1907
- 34
Liu Q, Nozari G, Sommer S S.
Single-tube polymerase chain reaction for rapid diagnosis of the inversion hotspot
of mutation in hemophilia A.
Blood.
1998;
92
1458-1459
- 35
Liu Q, Sommer S S.
Subcycling-PCR for multiplex long-distance amplification of regions with high and
low GC content: application to the inversion hotspot in the factor VIII gene.
Biotechniques.
1998;
25
1022-1028
- 36
Kilian N L, Pospisil V, Hanrahan V.
Haemophilia A, factor VIII intron 22 inversion screening using subcycling-PCR.
Thromb Haemost.
2006;
95
746-747
- 37
Vidal F, Sanchez-Garcia J F, Farssac E, Ramirez L, Gallardo D.
Rapid single-step detection of the inversion hotspot of mutation in hemophilia A by
real-time PCR.
J Thromb Haemost.
2005;
3
2822-2823
- 38
Bagnall R D, Giannelli F, Green P M.
Int22h-related inversions causing hemophilia A: a novel insight into their origin
and a new more discriminant PCR test for their detection.
J Thromb Haemost.
2006;
4
591-598
- 39
Rossetti L C, Radic C P, Larripa I B, De Brasi C D.
Genotyping the hemophilia inversion hotspot by use of inverse PCR.
Clin Chem.
2005;
51
1154-1158
- 40
Bowen D J, Keeney S.
Unleashing the long-distance PCR for detection of the intron 22 inversion of the factor
VIII gene in severe haemophilia A.
Thromb Haemost.
2003;
89
201-202
- 41
Rossetti L C, Radic C P, Larripa I B, De Brasi C D.
Developing a new generation of tests for genotyping hemophilia causative rearrangements
involving int22h and int1h hotspots in the factor 8 gene.
J Thromb Haemost.
2008;
6
830-836
- 42
Habart D, Kalabova D, Novotny M, Vorlova Z.
Thirty-four novel mutations detected in factor VIII gene by multiplex CSGE: modeling
of 13 novel amino acid substitutions.
J Thromb Haemost.
2003;
1
773-781
- 43
Repesse Y, Slaoui M, Ferrandiz D et al..
Factor VIII (FVIII) gene mutations in 120 patients with hemophilia A: detection of
26 novel mutations and correlation with FVIII inhibitor development.
J Thromb Haemost.
2007;
5
1469-1476
- 44
Williams I J, Abuzenadah A, Winship P R et al..
Precise carrier diagnosis in families with haemophilia A: use of conformation sensitive
gel electrophoresis for mutation screening and polymorphism analysis.
Thromb Haemost.
1998;
79
723-726
- 45
Goodeve A C, Williams I, Bray G L, Peake I R.
Relationship between factor VIII mutation type and inhibitor development in a cohort
of previously untreated patients treated with recombinant factor VIII (Recombinate).
Recombinate PUP Study Group.
Thromb Haemost.
2000;
83
844-848
- 46
Davies H, Dicks E, Stephens P et al..
High throughput DNA sequence variant detection by conformation sensitive capillary
electrophoresis and automated peak comparison.
Genomics.
2006;
87
427-432
- 47
Laurie A D, Smith M P, George P M.
Detection of factor VIII gene mutations by high-resolution melting analysis.
Clin Chem.
2007;
53
2211-2214
- 48
Keeney S, Watson P, Hay C, Cumming A.
Rapid turnaround for full mutation analysis of larger genes: robotic processing and
automated DNA sequencing of the essential regions of the FVIII (F8) gene for mutation
identification in haemophilia A.
J Med Genet.
2004;
41(Suppl1)
S67
- 49
Vidal F, Farssac E, Altisent C, Puig L, Gallardo D.
Rapid hemophilia A molecular diagnosis by a simple DNA sequencing procedure: identification
of 14 novel mutations.
Thromb Haemost.
2001;
85
580-583
- 50 Staden Package homepage. Available at http://staden.sourceforge.net/ Accessed March 3, 2008
- 51
Akkarapatumwong V, Oranwiroon S, Pung-amritt P et al..
Mutations of the factor VIII gene in Thai hemophilia A patients.
Hum Mutat.
2000;
15
117-118
- 52
Waseem N H, Bagnall R, Green P M, Giannelli F.
Start of UK confidential haemophilia A database: analysis of 142 patients by solid
phase fluorescent chemical cleavage of mismatch. Haemophilia Centres.
Thromb Haemost.
1999;
81
900-905
- 53
Rainen L, Oelmueller U, Jurgensen S et al..
Stabilization of mRNA expression in whole blood samples.
Clin Chem.
2002;
48
1883-1890
- 54
Fernandez-Lopez O, Garcia-Lozano J R, Nunez-Vazquez R, Perez-Garrido R, Nunez-Roldan A.
Characterization of sequence breakpoints in two haemophiliac patients with large FVIII
gene deletions.
Haemophilia.
2007;
13
682-684
- 55
Pavlova A, Forster T, Delev D et al..
Heterozygous large deletions of factor 8 gene in females identified by multiplex PCR-LC.
Haemophilia.
2008;
14
599-606
- 56
Tizzano E F, Barcelo M J, Baena M et al..
Rapid identification of female haemophilia A carriers with deletions in the factor
VIII gene by quantitative real-time PCR analysis.
Thromb Haemost.
2005;
94
661-664
- 57 MRC-Holland .MRC-Holland MLPA homepage. Available at http://www.mlpa.com/pages/indexpag.html Accessed February 26, 2008
- 58 Lannoy N, Abinet I, Verellen C, Vermylen C, Hermans K, Dahan K. Proposition for
a multi-step mutation detection in haemophilia A. ISTH 2007 Congress abstracts 2007:ISTH07A01_P-M-138
- 59 Lin H Y, Chen M, Chang H H et al.. Severe haemophilia A and factor VIII inhibitor
occurs in the young girl who has a carrier mother, Turner's syndrome and chromosomal
structural abnormalities with 45X(22)/46,X,IDIC(X)(Q21)(8). ISTH 2007 Congress abstracts
2007; P-M-142
- 60 Djambas Khayat C, Salem N, Chouery E et al.. Detection of 23 novel mutations in
Lebanese hemophilia patients. ISTH 2007 Congress abstracts 2007; P-S-156
- 61
Jayandharan G, Shaji R V, George B, Chandy M, Srivastava A.
Informativeness of linkage analysis for genetic diagnosis of haemophilia A in India.
Haemophilia.
2004;
10
553-559
- 62
Soares R P, Chamone D A, Bydlowski S P.
Factor VIII gene inversions and polymorphisms in Brazilian patients with haemophilia
A: carrier detection and prenatal diagnosis.
Haemophilia.
2001;
7
299-305
- 63
Azimifar S B, Seyedna S Y, Zeinali S.
Allele frequencies of three factor VIII gene polymorphisms in Iranian populations
and their application in hemophilia A carrier detection.
Am J Hematol.
2006;
81
335-339
- 64
Viel K R, Machiah D K, Warren D M et al..
A sequence variation scan of the coagulation factor VIII (FVIII) structural gene and
associations with plasma FVIII activity levels.
Blood.
2007;
109
3713-3724
- 65 NCBI db SNP webpage. Available at http://www.ncbi.nlm.nih.gov/projects/SNP/ Accessed February 26, 2008
- 66
Kim J W, Park S Y, Kim Y M, Kim J M, Kim D J, Ryu H M.
Identification of new dinucleotide-repeat polymorphisms in factor VIII gene using
fluorescent PCR.
Haemophilia.
2005;
11
38-42
- 67
Harraway J R, Smith M P, George P M.
A highly informative, multiplexed assay for the indirect detection of hemophilia A
using five-linked microsatellites.
J Thromb Haemost.
2006;
4
587-590
- 68
Chowdhury M R, Mathur R, Verma I C.
Utility of XY-amelogenin gene primers for detection of sex chromosomes.
Indian J Med Res.
1998;
107
182-186
- 69
Schrijver I, Cherny S C, Zehnder J L.
Testing for maternal cell contamination in prenatal samples: a comprehensive survey
of current diagnostic practices in 35 molecular diagnostic laboratories.
J Mol Diagn.
2007;
9
394-400
- 70
Santacroce R, Vecchione G, Tomaiyolo M et al..
Identification of fetal gender in maternal blood is a helpful tool in the prenatal
diagnosis of haemophilia.
Haemophilia.
2006;
12
417-422
- 71
Chi C, Hyett J A, Finning K M, Lee C A, Kadir R A.
Non-invasive first trimester determination of fetal gender: a new approach for prenatal
diagnosis of haemophilia.
BJOG.
2006;
113
239-242
- 72
Sekizawa A, Purwosunu Y, Matsuoka R et al..
Recent advances in non-invasive prenatal DNA diagnosis through analysis of maternal
blood.
J Obstet Gynaecol Res.
2007;
33
747-764
- 73
Michaelides K, Tuddenham E G, Turner C, Lavender B, Lavery S A.
Live birth following the first mutation specific pre-implantation genetic diagnosis
for haemophilia A.
Thromb Haemost.
2006;
95
373-379
- 74
Lavery S.
Preimplantation genetic diagnosis: new reproductive options for carriers of haemophilia.
Haemophilia.
2004;
10(Suppl 4)
126-132
- 75
Renwick P, Ogilvie C M.
Preimplantation genetic diagnosis for monogenic diseases: overview and emerging issues.
Expert Rev Mol Diagn.
2007;
7
33-43
- 76 Human Genome Variation Society .Nomenclature for the description of sequence variations
webpage. Available at http://www.hgvs.org/mutnomen/ Accessed March 2, 2008
- 77
Keeney S, Mitchell M, Goodeve A.
The molecular analysis of haemophilia A: a guideline from the UK haemophilia centre
doctors' organization haemophilia genetics laboratory network.
Haemophilia.
2005;
11
387-397
- 78 Bell J, Bodmer D, Sistermans E, Ramsden S. Practice Guidelines for the Interpretation
and Reporting of Unclassified Variants (UVs) in Clinical Molecular Genetics. Available at http://cmgsweb.shared.hosting.zen.co.uk/BPGs/Best_Practice_Guidelines.htm Accessed March 2, 2008
- 79
Perry D J, Goodeve A, Hill M, Jennings I, Kitchen S, Walker I.
The UK National External Quality Assessment Scheme (UK NEQAS) for molecular genetic
testing in haemophilia.
Thromb Haemost.
2006;
96
597-601
- 80
Castaman G, Giacomelli S H, Ghiotto R et al..
Spectrum of mutations in Albanian patients with haemophilia A: identification of ten
novel mutations in the factor VIII gene.
Haemophilia.
2007;
13
311-316
- 81
Boekhorst J, Verbruggen B, Lavergne J M et al..
Thirteen novel mutations in the factor VIII gene in the Nijmegen haemophilia A patient
population.
Br J Haematol.
2005;
131
109-117
- 82
Guillet B, Lambert T, d'Oiron R et al..
Detection of 95 novel mutations in coagulation factor VIII gene F8 responsible for
hemophilia A: results from a single institution.
Hum Mutat.
2006;
27
676-685
Anne GoodevePh.D.
Honorary Clinical Scientist and Reader in Molecular Medicine, Sheffield Molecular
Genetics Service
Sheffield Children's NHS Foundation Trust, Western Bank, Sheffield S10 2TH, UK
eMail: a.goodeve@shef.ac.uk