Subscribe to RSS
DOI: 10.1055/a-2800-4140
Genetic Testing and Challenges in a Level IV Midwestern NICU: Who, What, When, and Then?
Authors
Abstract
Objective
This study aimed to examine genetic testing strategies and their impact on redirection of care and on reducing prognostic uncertainty in the NICU.
Study Design
This is a retrospective cohort study from 2020 to 2021.
Results
Out of 774 NICU infants, 133 (17%) received genetic testing, most commonly whole exome sequencing. A genetic diagnosis was achieved in 33% of cases. About 70% of infants who received genetic testing were not critically ill. Decisions about redirection of care were associated with presence of critical illness and not presence of genetic diagnosis. Many rare diagnoses were made through genetic testing in the NICU, but except for certain chromosomal anomalies, these diagnoses had wide variability in reported phenotypic presentations.
Conclusion
Genetic testing achieves a unifying diagnosis for many NICU patients, yet many of these diagnoses have variable clinical presentations. Redirection of care in the NICU is reliant on clinical illness severity more often than achievement of a genetic diagnosis. Clinicians must provide meaningful interpretation of genetic test results to families and be prepared to confront uncertainty even after pathogenic variants are found.
Key Points
-
One-fifth of NICU patients received genetic testing.
-
Often, these patients were not critically ill.
-
Genetic diagnosis was made in a third of patients tested.
-
Most diagnoses had variable phenotypic presentations.
-
Redirection of care was associated with critical illness.
Data Availability Statement
The dataset generated and analyzed during the current study are not publicly available due to privacy reasons as they include patient or parent identifiers.
Contributors' Statement
H.M.: data curation, formal analysis, investigation, writing—original draft; J.S.S.: conceptualization, investigation, methodology, resources, supervision, writing—original draft, writing—review and editing; E.R.: conceptualization, formal analysis, investigation, methodology, resources, supervision, writing—original draft, writing—review and editing; K.A.: conceptualization, data curation, formal analysis, investigation, methodology, supervision, validation, writing—original draft, writing—review and editing.
Publication History
Received: 20 October 2025
Accepted: 28 January 2026
Accepted Manuscript online:
30 January 2026
Article published online:
10 February 2026
© 2026. Thieme. All rights reserved.
Thieme Medical Publishers, Inc.
333 Seventh Avenue, 18th Floor, New York, NY 10001, USA
-
References
- 1 Callahan KP, Radack J, Wojcik MH. et al. Hospital-level variation in genetic testing in children's hospitals' neonatal intensive care units from 2016 to 2021. Genet Med 2023; 25 (03) 100357
- 2 Swaggart KA, Swarr DT, Tolusso LK, He H, Dawson DB, Suhrie KR. Making a genetic diagnosis in a level IV neonatal intensive care unit population: who, when, how, and at what cost?. J Pediatr 2019; 213: 211-217.e4
- 3 Marouane A, Olde Keizer RACM, Frederix GWJ, Vissers LELM, de Boode WP, van Zelst-Stams WAG. Congenital anomalies and genetic disorders in neonates and infants: a single-center observational cohort study. Eur J Pediatr 2022; 181 (01) 359-367
- 4 Hagen L, Khattar D, Whitehead K, He H, Swarr DT, Suhrie K. Detection and impact of genetic disease in a level IV neonatal intensive care unit. J Perinatol 2022; 42 (05) 580-588
- 5 D'Gama AM, Del Rosario MC, Bresnahan MA, Yu TW, Wojcik MH, Agrawal PB. Integrating rapid exome sequencing into NICU clinical care after a pilot research study. NPJ Genom Med 2022; 7 (01) 51
- 6 Aldridge CE, Osiovich H, Hal Siden H, Elliott AM. RAPIDOMICS Study, GenCOUNSEL Study. Rapid genome-wide sequencing in a neonatal intensive care unit: a retrospective qualitative exploration of parental experiences. J Genet Couns 2021; 30 (02) 616-629
- 7 Willig LK, Petrikin JE, Smith LD. et al. Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings. Lancet Respir Med 2015; 3 (05) 377-387
- 8 Stark Z, Lunke S, Brett GR. et al; Melbourne Genomics Health Alliance. Meeting the challenges of implementing rapid genomic testing in acute pediatric care. Genet Med 2018; 20 (12) 1554-1563
- 9 Callahan KP, Flibotte J, Skraban C. et al. Influence of genetic information on neonatologists' decisions: a psychological experiment. Pediatrics 2022; 149 (03) e2021052130
- 10 Janvier A, Barrington K, Lantos J. Next generation sequencing in neonatology: what does it mean for the next generation?. Hum Genet 2022; 141 (05) 1027-1034
- 11 Dimmock DP, Clark MM, Gaughran M. et al; RCIGM Investigators. An RCT of rapid genomic sequencing among seriously ill infants results in high clinical utility, changes in management, and low perceived harm. Am J Hum Genet 2020; 107 (05) 942-952
- 12 Lantos JD, Brunelli L, Hayeems RZ. Understanding the clinical utility of genome sequencing in critically ill newborns. J Pediatr 2023; 258: 113438
- 13 Chad L, Anderson J, Cagliero D, Hayeems RZ, Ly LG, Szuto A. Rapid genetic testing in pediatric and neonatal critical care: a scoping review of emerging ethical issues. Hosp Pediatr 2022; 12 (10) e347-e359
- 14 Callahan KP, Mueller R, Flibotte J, Largent EA, Feudtner C. Measures of utility among studies of genomic medicine for critically ill infants: a systematic review. JAMA Netw Open 2022; 5 (08) e2225980
- 15 Harris PA, Taylor R, Thielke R, Payne J, Gonzalez N, Conde JG. Research electronic data capture (REDCap)—a metadata-driven methodology and workflow process for providing translational research informatics support. J Biomed Inform 2009; 42 (02) 377-381
- 16 Acharya K, Rholl E, Malin K. et al. Parent health-related quality of life for infants with congenital anomalies receiving neonatal intensive care. J Pediatr 2022; 245: 39-46.e2
- 17 Weiner J, Sharma J, Lantos J. et al. How infants die in the neonatal intensive care unit: trends from 1999 through 2008. Arch Pediatr Adolesc Med 2011; 165 (07) 630-634
- 18 Helm BM, Hays M, Swaggart KA. et al. Standardized criteria for genomic testing in the NICU. Pediatrics 2025; 156 (01) e2024069591
- 19 Callahan KP, Clayton EW, Lemke AA. et al. Ethical and legal issues surrounding genetic testing in the NICU. Neoreviews 2024; 25 (03) e127-e138
- 20 Wojcik MH, D'Gama AM, Agrawal PB. A model to implement genomic medicine in the neonatal intensive care unit. J Perinatol 2023; 43 (02) 248-252
- 21 Goranitis I, Wu Y, Lunke S. et al. Is faster better? An economic evaluation of rapid and ultra-rapid genomic testing in critically ill infants and children. Genet Med 2022; 24 (05) 1037-1044
- 22 Mowery A, Brunelli L. The role of genetic testing in palliative care decisions for critically ill newborns. Children (Basel) 2025; 12 (05) 634
- 23 Mowery A, Wong B, Seale J, Brunelli L. Exploring the role of genetic testing in decisions to redirect care in critically ill infants. Am J Hosp Palliat Med 2025; 42 (10) 1012-1021
- 24 Callahan KP, Mueller R, Joffe S. et al. How neonatologists use genetic information. J Pediatr 2025; 280: 114508
- 25 Rodriguez KM, Vaught J, Salz L. et al. Rapid whole-genome sequencing and clinical management in the PICU: a multicenter cohort, 2016-2023. Pediatr Crit Care Med 2024; 25 (08) 699-709
- 26 Burke W, Parens E, Chung WK, Berger SM, Appelbaum PS. The challenge of genetic variants of uncertain clinical significance: a narrative review. Ann Intern Med 2022; 175 (07) 994-1000
- 27 Marom D, Mory A, Reytan-Miron S. et al. National rapid genome sequencing in neonatal intensive care. JAMA Netw Open 2024; 7 (02) e240146
- 28 Callahan KP, Mueller R, Joffe S. et al. Parents' perceptions of the utility of genetic testing in the NICU. Genet Med 2025; 27 (06) 101393
- 29 Halley MC, Young JL, Fernandez L. et al; Undiagnosed Diseases Network. Perceived utility and disutility of genomic sequencing for pediatric patients: perspectives from parents with diverse sociodemographic characteristics. Am J Med Genet A 2022; 188 (04) 1088-1101
- 30 Cortezzo DE, Callahan KP, Chaudhari BP. et al. Managing the uncertainty of “precision” while navigating goals of care: a framework for collaborative interpretation of complex genomic testing results in critically-ill neonates. Children (Basel) 2025; 13 (01) 34
