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DOI: 10.1055/s-2004-831200
Technical Scale Synthesis of a New and Highly Potent Thrombin Inhibitor
Publication History
Publication Date:
25 August 2004 (online)

Abstract
In this account, we describe the development of an efficient and convergent process for the peptidomimetic thrombin inhibitor 1 on production plant scale. Starting from nicotinonitrile (13), (2S,4R)-1-(tert-butoxycarbonyl)-4-hydroxy-2-pyrrolidinecarboxylic acid (5) and (2R)-2-amino-3-cyclohexylpropanoic acid (29) compound 1 was obtained in 16 chemical steps. New methods had been developed for the preparation of the key intermediate dehydroproline 22 and the transformation of nitriles into amidines. The thrombin inhibitor 1 was isolated by special techniques (nanofiltration and spray drying). Almost all salts of 1 are amorphous, however, a crystalline complex was obtained with 1,2-benzisothiazol-3(2H)-one 1,1-dioxide (Saccharin®).
Key words
amino acids - drugs - enantiomeric resolution - heterocycles - stereoselective synthesis
- 1a 
             
            Sorbera LA.Bayes M.Castaner J.Silvestre J. Drugs Future 2001, 12: 1155
- 1b 
             
            Pfau R. Curr. Opin. Drug Disc. 2003, 6: 437
- 1c 
             
            Sanderson PEJ.Stanton MG.Dorsey BD.Lyle TA.McDonough C.Sanders WM.Savage KL.Naylor-Olsen AM.Krueger JA.Lewis SD.Lucas BJ.Lynch JJ.Yan Y. Bioorg. Med. Chem. Lett. 2003, 13: 795
- 1d 
             
            Olsen JA.Banner DW.Seiler P.Obst Sander U.D’Arcy A.Stihle M.Müller K.Diederich F. Angew. Chem. Int. Ed. 2003, 42: 2507
- 1e 
             
            Nilsson JW.Kvarnström I.Musil D.Nilsson I.Samulesson B. J. Med. Chem. 2003, 46: 3985
- 2 
             
            Hemostasis and Thrombosis: Basic Principles and Clinical Practice
              
            3rd ed.: 
             
            Colman RW.Hirsch J.Marder VJ.Salzman EW. Lippincott J. B.; Philadelphia: 1994.Reference Ris Wihthout Link
- 3a 
             
            Wiley MR.Fisher MJ. Exp. Opin. Ther. Patents 1997, 7: 1265
- 3b 
             
            Rewinkel JBM.Adang AEP. Curr. Pharm. Design 1999, 5: 1043
- 4a  
            Böhm H.-J,Hoeffken HW,Hornberger W,Koser S,Mack H,Pfeiffer T,Seitz W, andZierke T. inventors; World Patent 9625426. ; Chem. Abstr. 1996, 125, 301605
- 4b 
             
            Lange UEW.Baucke D.Hornberger W.Mack H.Seitz W.Höffken W. Bioorg. Med. Chem. Lett. 2003, 13: 2029
- 4c  
            Lange, U. E. W.; Baucke, D.; Hornberger, W.; Mack, H.; Seitz, W.; Höffken, W., manuscript in preparation. 
- 6 
             
            Rüeger H.Benn MH. Can. J. Chem. 1982, 60: 2918
- 7 
             
            Barker PL.Gendler PL.Rapoport H. J. Org. Chem. 1981, 46: 2455
- 8a 
             
            Wissmann H.Kleiner H.-J. Angew. Chem., Int. Ed. Engl. 1980, 19: 133 ; Angew. Chem. 1980, 92, 129
- 8b 
             
            Wissmann H. Phosphorus and Sulfur 1987, 30: 645
- 8c 
             
            Escher R.Bünning P. Angew. Chem., Int. Ed. Engl. 1986, 25: 277 ; Angew. Chem. 1986, 98, 264
- 9a 
             
            Engbersen JFJ.Koudijs A.Joosten MHA.van der Plas HC. J. Heterocycl. Chem. 1986, 13: 989
- 9b 
             
            Takamizawa S.Wakasa N.Fuchikami T. Synlett 2001, 1623
- 9c 
             
            Bullock MW.Hand JJ.Stokstad ELR. J. Am. Chem. Soc. 1956, 78: 3693
- 9d 
             
            Atkins H.Wolff IA.Pavlic A.Hutchinson E. J. Am. Chem. Soc. 1944, 66: 1293
- 9e 
             
            Hilpert K.Ackermann J.Banner DW.Gast A.Gubernator K.Hadváry P.Labler L.Müller K.Schmid G.Tschopp TB.van der Waterbeemd H. J. Med. Chem. 1994, 37: 3889
- 10 
             
            Bouchet M.-J.Rendon A.Wermuth CG.Goeldner M.Hirth C. J. Med. Chem. 1987, 30: 2222
- 11a 
             
            Minisci F.Galli R. Tetrahedron Lett. 1965, 6: 433
- 11b 
             
            Minisci F. Synthesis 1973, 1
- 11c 
             
            Minisci F.Citterio A.Vismara E.Giordano C. Tetrahedron 1985, 41: 4157
- 12 
             
            Houssin R.Bernier J.-L.Hénichart J.-P. Synthesis 1988, 259
- 13 
             
            Donohoe TJ.Guyo PM. J. Org. Chem. 1996, 61: 7664
- 14 
             
            Harbuck JW.Rapoport H. J. Org. Chem. 1972, 37: 3618
- 15 
             
            Bailey DM.Johnson RE.Albertson NF. Org. Synth. 1971, 51: 100
- 16 
             
            Grehn L.Ragnarsson U. Angew. Chem. Int. Ed. Engl. 1984, 23: 296 ; Angew. Chem. 1984, 96, 291
- 17 
             
            Stürmer R.Schäfer B.Wolfart V.Stahr H.Kazmaier U.Helmchen G. Synthesis 2001, 46
- 18a 
             
            Dormay J.-R.Castro B.Chappuis G.Fritschi U.-S.Grogg P. Angew. Chem. Int. Ed. Engl. 1980, 19: 742 ; Angew. Chem. 1980, 92, 761
- 18b 
             
            Dormay J.-R. Synthesis 1982, 753
- 19  
            Pfeiffer T,Seitz W,Mack H,Zierke T,Balkenhohl F, andLange U. inventors; German Patent 19630082. ; Chem. Abstr. 1998, 128, 154380Reference Ris Wihthout Link
- CAUTION! Thermal runaway reaction with NaH and DMF are known in literature:
- 20a 
             
            DeWall G. Chem. Eng. News 1982, 60(37): 5
- 20b 
             
            DeWall G. Chem. Eng. News 1982, 60(37): 43
- 20c 
             
            Buckley J.Webb RL.Laird T.Ward RJ. Chem. Eng. News 1982, 60(28): 5
- 20d 
             
            Bretherick L. Handbook of Reactive Chemical Hazards 4th ed.: Butterworth-Heinemann Ltd.; Boston: 1990. p.1181
- 21a 
             
            Jones MF. J. Chem. Soc., Perkin Trans. 1 1991, 2479
- 21b 
             
            Rapoport H. J. Org. Chem. 1994, 54: 394
- 22a 
             
            Pinner A. Ber. Dtsch. Chem. Ges. 1885, 18: 2845
- 22b 
             
            Stilz HU.Jablonka B.Just M.Knolle J.Paulus EF.Zoller G. J. Med. Chem. 1996, 39: 2118
- 23 
             
            Schaefer FC.Peters GA. J. Org. Chem. 1961, 26: 412
- 24a 
             
            Medwid JB. J. Med. Chem. 1990, 33: 1230
- 24b 
             
            Soula C.Marsura A.Luu-Duc C. J. Pharm. Belg. 1987, 42: 293 ; Chem. Abstr. 1988, 109, 109969
- 24c 
             
            Hullin RP.Miller J.Short WF. J. Org. Chem. 1947, 12: 394
- 24d 
             
            Thurkauf A. J. Labelled Compd. Radiopharm. 1997, 39: 123
- 24e 
             
            Garigipati RS. Tetrahedron Lett. 1990, 31: 1969
- 24f 
             
            Moss RA.Ma W.Merrer DC.Xue S. Tetrahedron Lett. 1995, 36: 8761
- 24g 
             
            Kirby JB.van Dantzig NA.Chang CK.Nocera DG. Tetrahedron Lett. 1995, 36: 3477
- 25a 
             
            Jendralla H.Seuring B.Herchen J.Kulitzscher B.Wunner J.Stüber W.Koschinsky R. Tetrahedron 1995, 51: 12047
- 25b 
             
            Judkins BD.Allen DG.Cook TA.Evans B.Sardharwalla TA. Synth. Commun. 1996, 26: 4351
- 25c 
             
            Bolton RE.Coote SJ.Finch H.Lowdon H.Pegg N.Vinader MV. Tetrahedron Lett. 1995, 36: 4471
- 26 
             
            Partridge MW.Short WF. J. Org. Chem. 1947, 12: 390
- 27 
             
            Lange UEW.Schäfer B.Baucke D.Buschmann E.Mack H. Tetrahedron Lett. 1999, 40: 7067
- 28 
             
            Moser H.Fliri A.Steiger A.Costello G.Schreiber J.Eschenmoser A. Helv. Chim. Acta 1986, 69: 1224
- 29a 
             
            Bergeron HJ.Niegard J.Dichs JB.Egli-Karmakka M.Frei J.Huxley-Tencer A.Peter HH. J. Med. Chem. 1991, 34: 2072
- 29b 
             
            Kwiatkowski S.Crocker PJ.Chavan AJ.Imai N.Haley BE.Watt DS. Tetrahedron Lett. 1990, 31: 2093
- 29c 
             
            Ehrler J.Farooq S. Synlett 1994, 702
- Reviews:
- 30a 
             
            Dalko PI.Moisan L. Angew. Chem. Int. Ed. 2001, 40: 3726 ; Angew. Chem. 2001, 113, 3840
- 30b 
             
            Jarvo ER.Miller SJ. Tetrahedron 2002, 58: 2481
- 31 
             
            Henecka H.Kurtz P. In Houben-Weyl Methoden der Organischen Chemie 4th ed., Vol. 8: Thieme; Stuttgart: 1952. p.703Reference Ris Wihthout Link
- 33a 
             
            Razdan U.Shah VJ. J. Sci. Ind. Res. 2001, 60: 560
- 33b 
             
            Dijkstra HP.van Klink GPM.van Koten G. Acc. Chem. Res. 2002, 35: 798
- 34  
            Schäfer B,Harms G,Ascherl H, andKrei GA. inventors; World Patent 200068254. ; Chem. Abstr. 2000, 133, 366431Reference Ris Wihthout Link
- 35  
            Schäfer B. inventors; European Patent 1054017. ; Chem. Abstr. 2000, 133, 366468Reference Ris Wihthout Link
References
Lit. Ref. [4a] , Example 32 and 93.
32For ion exchange chromatography an acetate ion exchanger from BIO RAD was used: AG 1-X8 Resin, 100-200 mesh, acetate form (catalog-Nr.: 140-1443) Address: BIO RAD (BIO RAD laboratories, 2000 Alfred Nobel Dr., Hercules, CA 94547. Due to the water content (48%) before chromatography the ion exchanger was treated with an excess of anhyd MeOH. Based on the content of acetate more than two equivalents were used. The column should be thin and long. For ion exchange chromatography MeOH was used as the solvent.
36ICH Guideline Q7A: http://www.fda.gov/cder/guidance/1289dft.pdf.
 
    