Synlett
DOI: 10.1055/a-2698-3056
letter
Small Molecules in Medicinal Chemistry

Three-Step Synthesis of 3-Aminoindole-2-carboxylate-Conjugated 2-Amino-6-chloropyrimidines and Their Anticancer Activity

Abburi Naga Pranathi
a   Fluoro & Agro Chemicals Division, CSIR-Indian Institute of Chemical Technology , Uppal Road, Hyderabad, 500007, Telangana, India
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
,
Nagineni Devendra
a   Fluoro & Agro Chemicals Division, CSIR-Indian Institute of Chemical Technology , Uppal Road, Hyderabad, 500007, Telangana, India
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
,
Prakash Suman Behera
a   Fluoro & Agro Chemicals Division, CSIR-Indian Institute of Chemical Technology , Uppal Road, Hyderabad, 500007, Telangana, India
,
Yalavarthi Sai Swetha
a   Fluoro & Agro Chemicals Division, CSIR-Indian Institute of Chemical Technology , Uppal Road, Hyderabad, 500007, Telangana, India
,
Kanchana Vasapalli
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
c   Applied Biology, CSIR-Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
,
Sunil Misra
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
c   Applied Biology, CSIR-Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
,
Balasubramanian Sridhar
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
d   Centre for X-ray Crystallography, Analytical Chemistry Division, CSIR-Indian Institute of Chemical Technology, Hyderabad, 500007, Telangana, India
,
a   Fluoro & Agro Chemicals Division, CSIR-Indian Institute of Chemical Technology , Uppal Road, Hyderabad, 500007, Telangana, India
b   Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, Uttar Pradesh, India
› Author Affiliations

We would like to thank the Council of Scientific and Industrial Research, India (CSIR) for financial assistance from the Agromission projects (HCP-0049). A.N.P. would like to thank the Department of Science and Technology, Ministry of Science and Technology, India (DST-INSPIRE) for a fellowship program providing funding for this project (IF180770).


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Abstract

The synthesis of novel indolo-pyrimidine derivatives is of considerable interest due to the combined pharmacological benefits of indole and pyrimidine cores, particularly for anticancer applications. In this study, we report an efficient three-step synthesis of a novel series of 3-amino-1-(2-amino-6-chloropyrimidin-4-yl)-1H-indole-2-carboxylate derivatives, employing specific bases and solvents, in high yields. The synthetic route proceeds through key intermediates: 2-aminopyrimidine-benzonitriles and 2-aminopyrimidine-glycinates, culminating in the formation of 2-aminopyrimidine-indole hybrids. Biological evaluation of the products against three human cancer cell lines and one normal cell line revealed moderate anticancer activity and minimal toxicity, highlighting their potential as promising leads for further anticancer drug development.

Supporting Information



Publication History

Received: 04 July 2025

Accepted after revision: 09 September 2025

Accepted Manuscript online:
09 September 2025

Article published online:
23 September 2025

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